4LQC The crystal structures of the Brucella protein TcpB and the TLR adaptor protein TIRAP show structural differences in microbial TIR mimicry. date 2013-07-17
authors Snyder, G.A., Smith, P., Fresquez, T., Cirl, C., Jiang, J., Snyder, N., Luchetti, T., Miethke, T., Xiao, T.S.
compound source
symmetry
R_factor
R_Free 0.2628
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.30
Gene NC
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structures of the Toll/Interleukin-1 receptor (TIR) domains from the Brucella protein TcpB and host adaptor TIRAP reveal mechanisms of molecular mimicry., Snyder GA, Deredge D, Waldhuber A, Fresquez T, Wilkins DZ, Smith PT, Durr S, Cirl C, Jiang J, Jennings W, Luchetti T, Snyder N, Sundberg EJ, Wintrode P, Miethke T, Xiao TS, J Biol Chem. 2014 Jan 10;289(2):669-79. doi: 10.1074/jbc.M113.523407. Epub 2013, Nov 25. PMID:24275656
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk]
  • Biological Unit Coordinates (4lqc.pdb1.gz) 43 Kb
  • CSU: Contacts of Structural Units for 4LQC
  • Structure Factors (180 Kb)
  • Retrieve 4LQC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4LQC from S2C, [Save to disk]
  • Re-refined 4lqc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4LQC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4LQC
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4LQC, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4lqc_B] [4lqc] [4lqc_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4LQC: [TIR ] by SMART
    • Other resources with information on 4LQC
  • Community annotation for 4LQC at PDBWiki (http://pdbwiki.org)

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