4LSD Myokine structure date 2013-07-22
authors Schumacher, M.A., Ohashi, T., Shah, R.S., Chinnam, N., Erickson, H.
compound source
symmetry
R_factor
R_Free 0.236
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.28
ligand MSE enzyme
Primary referenceStructure of irisin reveals a novel intersubunit beta-sheet fibronectin (FNIII) dimer; implications for receptor activation., Schumacher MA, Chinnam N, Ohashi T, Shah RS, Erickson H, J Biol Chem. 2013 Oct 10. PMID:24114836
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (132 Kb) [Save to disk]
  • Biological Unit Coordinates (4lsd.pdb1.gz) 34 Kb
  • Biological Unit Coordinates (4lsd.pdb2.gz) 33 Kb
  • Biological Unit Coordinates (4lsd.pdb3.gz) 33 Kb
  • Biological Unit Coordinates (4lsd.pdb4.gz) 34 Kb
  • LPC: Ligand-Protein Contacts for 4LSD
  • CSU: Contacts of Structural Units for 4LSD
  • Structure Factors (448 Kb)
  • Retrieve 4LSD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4LSD from S2C, [Save to disk]
  • Re-refined 4lsd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4LSD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4LSD
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4LSD, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4lsd_A] [4lsd_C] [4lsd] [4lsd_H] [4lsd_E] [4lsd_D] [4lsd_G] [4lsd_B] [4lsd_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4LSD: [FN3 ] by SMART
  • Other resources with information on 4LSD
  • Community annotation for 4LSD at PDBWiki (http://pdbwiki.org)

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