4ODB Crystal structure of the T1L reovirus attachment protein sigma1 in complex with Junctional Adhesion Molecule-A date
authors Stettner, E., Stehle, T.
compound source
symmetry
R_factor
R_Free 0.2425
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.20
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


F, D, E


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (131 Kb) [Save to disk]
  • Biological Unit Coordinates (4odb.pdb1.gz) 126 Kb
  • CSU: Contacts of Structural Units for 4ODB
  • Structure Factors (202 Kb)
  • Retrieve 4ODB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4ODB from S2C, [Save to disk]
  • Re-refined 4odb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4ODB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4ODB
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4ODB, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4odb_A] [4odb_E] [4odb_C] [4odb_F] [4odb_B] [4odb_D] [4odb]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4ODB: [IGv ] by SMART
  • Other resources with information on 4ODB
  • Community annotation for 4ODB at PDBWiki (http://pdbwiki.org)

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