4OO1
date
authors
compound
source
symmetry
R_factor
R_Free
crystal
cell
length a
length b
length c
angle alpha
angle beta
angle gamma
method
X-Ray Diffraction
resolution
ligand
MES
,
MG
,
MPD
,
PO4
enzyme
Gene
Ontology
Chain
Function
Process
Component
A
nuclear exosome (RNase compl...
cytoplasmic exosome (RNase c...
B
nuclear exosome (RNase compl...
cytoplasmic exosome (RNase c...
C
nuclear exosome (RNase compl...
cytoplasmic exosome (RNase c...
D
nuclear exosome (RNase compl...
cytoplasmic exosome (RNase c...
E
nuclear exosome (RNase compl...
cytoplasmic exosome (RNase c...
F
nuclear exosome (RNase compl...
cytoplasmic exosome (RNase c...
G
nuclear exosome (RNase compl...
cytoplasmic exosome (RNase c...
H
nuclear exosome (RNase compl...
cytoplasmic exosome (RNase c...
I
nuclear exosome (RNase compl...
cytoplasmic exosome (RNase c...
J
Primary reference
Structure of an Rrp6-RNA exosome complex bound to poly(A) RNA., Wasmuth EV, Januszyk K, Lima CD, Nature. 2014 Jul 24;511(7510):435-9. doi: 10.1038/nature13406. Epub 2014 Jul 6. PMID:
25043052
Data retrieval
Asymmetric unit, PDB entry:
[header only]
[complete with coordinates]
(933 Kb)
[Save to disk]
Biological Unit Coordinates
(4oo1.pdb1.gz) 919 Kb
LPC:
Ligand-Protein Contacts
for 4OO1
CSU:
Contacts of Structural Units
for 4OO1
Structure Factors
(884 Kb)
Retrieve 4OO1 in
mmCIF
format
[Save to disk]
SEQRES to COORDINATES
correlation for
4OO1
from
S2C
,
[Save to disk]
Re-refined
4oo1
structure from
PDB_REDO
, a databank with updated and optimised macromolecular X-ray diffraction structure models
View 4OO1 in 3D
Proteopedia
, because life has more than 2D.
On
Jmol
, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
On
FirstGlance
, an excellent tool for a guided tour on the structure components, by
E. Martz
.
Structure-derived information
Dipole
moment, from
Dipole Server
at Weizmann Institute
Sequence-derived information
View one-letter amino acid or nucleotide sequence for each chain:
[4oo1]
[4oo1_A]
[4oo1_B]
[4oo1_C]
[4oo1_D]
[4oo1_E]
[4oo1_F]
[4oo1_G]
[4oo1_H]
[4oo1_I]
[4oo1_J]
[4oo1_S]
SWISS-PROT
database:
Domains
found in 4OO1:
[35EXOc]
[HRDC]
[S1 ]
by
SMART
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