4OQX Crystal structure of thymidine kinase from herpes simplex virus type 1 in complex with Me-ARA-EdU date
authors Pernot, L., Neef, A.B., Westermaier, Y., Perozzo, R., Luedtke, N., Scapozza, L.
compound source
symmetry
R_factor
R_Free 0.2505
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.50
ligand EDV, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceDynamic metabolic labeling of DNA in vivo with arabinosyl nucleosides., Neef AB, Luedtke NW, Proc Natl Acad Sci U S A. 2011 Dec 20;108(51):20404-9. doi:, 10.1073/pnas.1101126108. Epub 2011 Dec 5. PMID:22143759
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (103 Kb) [Save to disk]
  • Biological Unit Coordinates (4oqx.pdb1.gz) 98 Kb
  • LPC: Ligand-Protein Contacts for 4OQX
  • CSU: Contacts of Structural Units for 4OQX
  • Structure Factors (265 Kb)
  • Retrieve 4OQX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4OQX from S2C, [Save to disk]
  • Re-refined 4oqx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4OQX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4OQX
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4OQX, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4oqx_B] [4oqx] [4oqx_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4OQX
  • Community annotation for 4OQX at PDBWiki (http://pdbwiki.org)

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