4P29 Crystal structure of the LpoA N-terminal domain from Haemophilus influenzae date
authors Vijayalakshmi, J., Saper, M.A.
compound source
symmetry
R_factor
R_Free 0.218489952193
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.95
ligand CL, GOL, MSE, SO4 enzyme
Gene HI
Primary referenceStructure of YraM, a protein essential for growth of Haemophilus influenzae., Vijayalakshmi J, Akerley BJ, Saper MA, Proteins. 2008 Apr 15;. PMID:18412262
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (228 Kb) [Save to disk]
  • Biological Unit Coordinates (4p29.pdb1.gz) 112 Kb
  • Biological Unit Coordinates (4p29.pdb2.gz) 110 Kb
  • LPC: Ligand-Protein Contacts for 4P29
  • CSU: Contacts of Structural Units for 4P29
  • Structure Factors (432 Kb)
  • Retrieve 4P29 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4P29 from S2C, [Save to disk]
  • Re-refined 4p29 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4P29 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4P29
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4P29, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4p29] [4p29_B] [4p29_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4P29
  • Community annotation for 4P29 at PDBWiki (http://pdbwiki.org)

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