4P60 Structure of the N-terminal domain of the human mitochondrial aspartate/glutamate carrier Aralar in the apo state date
authors Thangaratnarajah, C., Ruprecht, J.J., Kunji, E.R.S.
compound source
symmetry
R_factor
R_Free 0.2966
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.40
ligand NA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCalcium-induced conformational changes of the regulatory domain of human mitochondrial aspartate/glutamate carriers., Thangaratnarajah C, Ruprecht JJ, Kunji ER, Nat Commun. 2014 Nov 20;5:5491. doi: 10.1038/ncomms6491. PMID:25410934
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (180 Kb) [Save to disk]
  • Biological Unit Coordinates (4p60.pdb1.gz) 173 Kb
  • LPC: Ligand-Protein Contacts for 4P60
  • CSU: Contacts of Structural Units for 4P60
  • Structure Factors (1219 Kb)
  • Retrieve 4P60 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4P60 from S2C, [Save to disk]
  • Re-refined 4p60 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4P60 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4P60
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4P60, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4p60_A] [4p60_B] [4p60]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4P60: [EFh ] by SMART
    • Other resources with information on 4P60
  • Community annotation for 4P60 at PDBWiki (http://pdbwiki.org)

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