4P6Z	Protein Transport	date	Mar 25, 2014
title	Crystal Structure Of The Human Bst2 Cytoplasmic Domain And T Vpu Cytoplasmic Domain Bound To The Clathrin Adaptor Protei (Ap1) Core
authors	X.Jia, Y.Xiong
compound		source
Molecule: Ap-1 Complex Subunit Gamma-1 Chain: G Fragment: Bst2tetheirn Cytoplasmic Domain, Unp Residues 1- Synonym: Adapter-Related Protein Complex 1 Subunit Gamma-1, Protein Complex Ap-1 Subunit Gamma-1,Clathrin Assembly Prot Complex 1 Gamma-1 Large Chain,Gamma-Adaptin,Gamma1-Adaptin, Adaptor Ha1ap1 Adaptin Subunit Gamma-1; Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090 Gene: Ap1g1, Adtg, Clapg1 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3)
Molecule: Ap-1 Complex Subunit Sigma-1a Chain: S Fragment: Hiv-1 Vpu Cytoplasmic Domain Synonym: Adapter-Related Protein Complex 1 Subunit Sigma-1a Protein Complex Ap-1 Subunit Sigma-1a,Clathrin Assembly Pro Complex 1 Sigma-1a Small Chain,Clathrin Coat Assembly Prote Golgi Adaptor Ha1ap1 Adaptin Sigma-1a Subunit,Ha1 19 Kda S Sigma 1a Subunit Of Ap-1 Clathrin,Sigma-Adaptin 1a,Sigma1a- Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ap1s1, Ap19, Claps1 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3)
Molecule: Ap-1 Complex Subunit Mu-1 Chain: M Fragment: Clathrin Adaptor Protein Complex 1 (Ap1) Core, Un 1-421; Synonym: Ap-Mu Chain Family Member Mu1a,Adapter-Related Pro Complex 1 Subunit Mu-1,Adaptor Protein Complex Ap-1 Subunit Clathrin Assembly Protein Complex 1 Mu-1 Medium Chain 1,Cla Assembly Protein Ap47,Clathrin Coat-Associated Protein Ap47 Adaptor Ha1ap1 Adaptin Mu-1 Subunit,Mu-Adaptin 1,Mu1a-Adap Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090 Gene: Ap1m1, Cltnm Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3)
Molecule: Ap-1 Complex Subunit Beta-1 Chain: B Fragment: Unp Residues 1-584 Synonym: Adapter-Related Protein Complex 1 Subunit Beta-1,A Protein Complex Ap-1 Subunit Beta-1,Beta-1-Adaptin,Beta-Ada Clathrin Assembly Protein Complex 1 Beta Large Chain,Golgi Ha1ap1 Adaptin Beta Subunit; Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ap1b1, Adtb1, Bam22, Clapb2 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3)
Molecule: Protein Vpu Chain: V Fragment: Unp Residues 21-81 Synonym: U Orf Protein,Viral Protein U Engineered: Yes		Organism_scientific: Human Immunodeficiency Virus Type 1 Gr Subtype B; Organism_common: Hiv-1 Organism_taxid: 11691 Strain: Isolate Sf162 Gene: Vpu Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3)
Molecule: Bone Marrow Stromal Antigen 2 Chain: T Fragment: Unp Residues 1-21 Synonym: Bst-2,Hm1.24 Antigen,Tetherin Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Bst2 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3)
symmetry	Space Group: P 43	R_factor 0.186 R_Free 0.229
crystal cell	length a length b length c angle alpha angle beta angle gamma 160.536 160.536 118.393 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.00 Å
Gene Ontology	Chain Function Process Component B G M S V
Primary reference	Structural basis of HIV-1 Vpu-mediated BST2 antagonism via hijacking of the clathrin adaptor protein complex 1., Jia X, Weber E, Tokarev A, Lewinski M, Rizk M, Suarez M, Guatelli J, Xiong Y, Elife. 2014 Apr 29;3:e02362. doi: 10.7554/eLife.02362. PMID:24843023

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (585 Kb) [Save to disk] Biological Unit Coordinates (4p6z.pdb1.gz) 576 Kb CSU: Contacts of Structural Units for 4P6Z Structure Factors (838 Kb) Retrieve 4P6Z in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4P6Z from S2C, [Save to disk] Re-refined 4p6z structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 4P6Z, from MSDmotif at EBI Fold representative 4p6z from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4p6z_B] [4p6z_M] [4p6z_V] [4p6z] [4p6z_S] [4p6z_G] [4p6z_T] SWISS-PROT database: Domain organization of by SWISSPFAM

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