4PAR The 5-Hydroxymethylcytosine-Specific Restriction Enzyme AbaSI in a Complex with Product-like DNA date
authors Horton, J.R., Cheng, X.
compound source
symmetry
R_factor
R_Free 0.2489
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.89
ligand 5HC, EDO enzyme
Primary referenceStructure of 5-hydroxymethylcytosine-specific restriction enzyme, AbaSI, in complex with DNA., Horton JR, Borgaro JG, Griggs RM, Quimby A, Guan S, Zhang X, Wilson GG, Zheng Y, Zhu Z, Cheng X, Nucleic Acids Res. 2014 Jun 3. pii: gku497. PMID:24895434
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (504 Kb) [Save to disk]
  • Biological Unit Coordinates (4par.pdb1.gz) 497 Kb
  • LPC: Ligand-Protein Contacts for 4PAR
  • CSU: Contacts of Structural Units for 4PAR
  • Structure Factors (300 Kb)
  • Retrieve 4PAR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4PAR from S2C, [Save to disk]
  • Re-refined 4par structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4PAR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4PAR
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4PAR, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4par] [4par_H] [4par_D] [4par_A] [4par_E] [4par_G] [4par_C] [4par_B] [4par_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4PAR
  • Community annotation for 4PAR at PDBWiki (http://pdbwiki.org)

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