4PDC Immune System Viral Protein date Apr 17, 2014
title Crystal Structure Of Cowpox Virus Cpxv018 (Omcp) Bound To Hu
authors E.Lazear, C.A.Nelson, D.H.Fremont, Center For Structural Genomi Infectious Diseases (Csgid)
compound source
Molecule: Nkg2-D Type II Integral Membrane Protein
Chain: A, B, C, D
Fragment: Unp Residues 93-215
Synonym: Killer Cell Lectin-Like Receptor Subfamily K Membe Cell Receptor D,Nkg2-D-Activating Nk Receptor;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Klrk1, D12s2489e, Nkg2d
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21a(+)

Molecule: Cpxv018 Protein
Chain: E, F
Fragment: Unp Residues 20-168
Engineered: Yes
Mutation: Yes

Organism_scientific: Cowpox Virus
Organism_common: Cpv
Organism_taxid: 10243
Gene: Cpxv018 Cds
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21a(+)
symmetry Space Group: P 1 21 1
R_factor 0.166 R_Free 0.214
crystal
cell
length a length b length c angle alpha angle beta angle gamma
43.315 101.110 91.368 90.00 91.63 90.00
method X-Ray Diffractionresolution 1.99 Å
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (266 Kb) [Save to disk]
  • Biological Unit Coordinates (4pdc.pdb1.gz) 132 Kb
  • Biological Unit Coordinates (4pdc.pdb2.gz) 132 Kb
  • CSU: Contacts of Structural Units for 4PDC
  • Structure Factors (406 Kb)
  • Retrieve 4PDC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4PDC from S2C, [Save to disk]
  • Re-refined 4pdc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4PDC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4PDC
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4PDC, from MSDmotif at EBI
  • Fold representative 4pdc from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4pdc_A] [4pdc_D] [4pdc] [4pdc_E] [4pdc_B] [4pdc_C] [4pdc_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4PDC: [CLECT ] by SMART
  • Other resources with information on 4PDC
  • Community annotation for 4PDC at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science