4PJD Structure of human MR1-5-OP-RU in complex with human MAIT C-C10 TCR date
authors Birkinshaw, R.W., Rossjohn, J.
compound source
symmetry
R_factor
R_Free 0.2259
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.78
ligand 2LJ, GOL enzyme
Gene
Ontology
ChainFunctionProcessComponent
D, B
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    • Primary referenceA molecular basis underpinning the T cell receptor heterogeneity of mucosal-associated invariant T cells., Eckle SB, Birkinshaw RW, Kostenko L, Corbett AJ, McWilliam HE, Reantragoon R, Chen Z, Gherardin NA, Beddoe T, Liu L, Patel O, Meehan B, Fairlie DP, Villadangos JA, Godfrey DI, Kjer-Nielsen L, McCluskey J, Rossjohn J, J Exp Med. 2014 Jul 28;211(8):1585-600. doi: 10.1084/jem.20140484. Epub 2014 Jul , 21. PMID:25049336
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (533 Kb) [Save to disk]
  • Biological Unit Coordinates (4pjd.pdb1.gz) 261 Kb
  • Biological Unit Coordinates (4pjd.pdb2.gz) 267 Kb
  • LPC: Ligand-Protein Contacts for 4PJD
  • CSU: Contacts of Structural Units for 4PJD
  • Structure Factors (1361 Kb)
  • Retrieve 4PJD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4PJD from S2C, [Save to disk]
  • Re-refined 4pjd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4PJD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4PJD
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4PJD, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4pjd_B] [4pjd_A] [4pjd_E] [4pjd_H] [4pjd_D] [4pjd_F] [4pjd] [4pjd_C] [4pjd_G]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4PJD: [IG_like] [IGc1] [IGv ] by SMART
    • Other resources with information on 4PJD
  • Community annotation for 4PJD at PDBWiki (http://pdbwiki.org)

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