4PPB	ITK kinase domain with compound 28 (N-{1-[(1S)-3-(DIMETHYLAMINO)-1-PHENYLPROPYL]-1H-PYRAZOL-4-YL}-6-(1H-PYRAZOL-4-YL)-1H-INDAZOLE-3-CARBOXAMIDE)	date
authors	Eigenbrot, C., Shia, S.
compound		source
symmetry		R_factor R_Free 0.2661
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	2.82
ligand	2VV	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Discovery and optimization of indazoles as potent and selective interleukin-2 inducible T cell kinase (ITK) inhibitors., Pastor RM, Burch JD, Magnuson S, Ortwine DF, Chen Y, De La Torre K, Ding X, Eigenbrot C, Johnson A, Liimatta M, Liu Y, Shia S, Wang X, Wu LC, Pei Z, Bioorg Med Chem Lett. 2014 Jun 1;24(11):2448-52. doi: 10.1016/j.bmcl.2014.04.023., Epub 2014 Apr 16. PMID:24767842

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (170 Kb) [Save to disk] Biological Unit Coordinates (4ppb.pdb1.gz) 84 Kb Biological Unit Coordinates (4ppb.pdb2.gz) 83 Kb Biological Unit Coordinates (4ppb.pdb3.gz) 165 Kb LPC: Ligand-Protein Contacts for 4PPB CSU: Contacts of Structural Units for 4PPB Structure Factors (182 Kb) Retrieve 4PPB in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4PPB from S2C, [Save to disk] Re-refined 4ppb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4PPB in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4PPB

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4PPB, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4ppb_B] [4ppb] [4ppb_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 4PPB: [TyrKc ] by SMART

Other resources with information on 4PPB

Community annotation for 4PPB at PDBWiki (http://pdbwiki.org)

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