OCA Atlas for 4PV1

4PV1

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

7PH, 8K6, BCR, CD, CLA, FES, HEC, MYS, OPC, SMA, SQD, UMQ

enzyme

Gene
Ontology

Chain	Function	Process	Component
A
B
C	electron transfer activity
D	electron transporter, transf...
E	electron transfer activity electron transporter, transf...
F	electron transfer activity
G	electron transporter, transf...
H	electron transfer activity electron transporter, transf...

Primary reference

Traffic within the cytochrome b6f lipoprotein complex: gating of the quinone portal., Hasan SS, Proctor EA, Yamashita E, Dokholyan NV, Cramer WA, Biophys J. 2014 Oct 7;107(7):1620-8. doi: 10.1016/j.bpj.2014.08.003. PMID:25296314

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (344 Kb) [Save to disk]

Biological Unit Coordinates (4pv1.pdb1.gz) 651 Kb

LPC: Ligand-Protein Contacts for 4PV1

CSU: Contacts of Structural Units for 4PV1

Structure Factors (761 Kb)

Retrieve 4PV1 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 4PV1 from S2C, [Save to disk]

Re-refined 4pv1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4PV1 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4pv1] [4pv1_A] [4pv1_B] [4pv1_C] [4pv1_D] [4pv1_E] [4pv1_F] [4pv1_G] [4pv1_H]

SWISS-PROT database:

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