4PVV Micobacterial Adenosine Kinase in complex with inhibitor date
authors Pichova, I., Hocek, M., Dostal, J., Rezacova, P.
compound source
symmetry
R_factor
R_Free 0.3411
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.50
ligand HO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural Basis for Inhibition of Mycobacterial and Human Adenosine Kinase by 7-Substituted 7-(Het)aryl-7-deazaadenine Ribonucleosides., Snasel J, Naus P, Dostal J, Hnizda A, Fanfrlik J, Brynda J, Bourderioux A, Dusek M, Dvorakova H, Stolarikova J, Zabranska H, Pohl R, Konecny P, Dzubak P, Votruba I, Hajduch M, Rezacova P, Veverka V, Hocek M, Pichova I, J Med Chem. 2014 Oct 23;57(20):8268-79. doi: 10.1021/jm500497v. Epub 2014 Oct 8. PMID:25259627
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk]
  • Biological Unit Coordinates (4pvv.pdb1.gz) 97 Kb
  • LPC: Ligand-Protein Contacts for 4PVV
  • CSU: Contacts of Structural Units for 4PVV
  • Structure Factors (206 Kb)
  • Retrieve 4PVV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4PVV from S2C, [Save to disk]
  • Re-refined 4pvv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4PVV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4PVV
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4PVV, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4pvv] [4pvv_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4PVV
  • Community annotation for 4PVV at PDBWiki (http://pdbwiki.org)

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