4Q4Z Thermus thermophilus RNA polymerase de novo transcription initiation complex date
authors Murakami, K.S.
compound source
symmetry
R_factor
R_Free 0.2747
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.90
ligand 2TM, ATP, MG, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


C


D


E


F
  • bacterial sigma factor activ...


  • Primary referenceStructural Basis of Transcription Initiation by Bacterial RNA Polymerase holoenzyme., Basu RS, Warner BA, Molodtsov V, Pupov D, Esyunina D, Fernandez-Tornero C, Kulbachinskiy A, Murakami KS, J Biol Chem. 2014 Jun 27. pii: jbc.M114.584037. PMID:24973216
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1202 Kb) [Save to disk]
  • Biological Unit Coordinates (4q4z.pdb1.gz) 1189 Kb
  • LPC: Ligand-Protein Contacts for 4Q4Z
  • CSU: Contacts of Structural Units for 4Q4Z
  • Structure Factors (1651 Kb)
  • Retrieve 4Q4Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4Q4Z from S2C, [Save to disk]
  • Re-refined 4q4z structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4Q4Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4Q4Z
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4Q4Z, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4q4z_G] [4q4z_E] [4q4z_A] [4q4z_H] [4q4z_C] [4q4z_F] [4q4z_B] [4q4z] [4q4z_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4Q4Z: [HhH1] [RNA_pol_Rpb6] [RPOLA_N] [RPOLD ] by SMART
  • Other resources with information on 4Q4Z
  • Community annotation for 4Q4Z at PDBWiki (http://pdbwiki.org)

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