4QMJ Protein Binding date Jun 16, 2014
title The Xmap215 Family Drives Microtubule Polymerization Using A Structurally Diverse Tog Array
authors J.C.Fox, A.E.Howard, J.D.Currie, S.L.Rogers, K.C.Slep
compound source
Molecule: Cytoskeleton-Associated Protein 5
Chain: A
Fragment: Tog Domain 4
Synonym: Colonic And Hepatic Tumor Overexpressed Gene Prote Tog;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Chtog, Ckap5, Kiaa0097
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28
symmetry Space Group: P 43 21 2
R_factor 0.208 R_Free 0.276
crystal
cell
length a length b length c angle alpha angle beta angle gamma
79.125 79.125 68.499 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand MSE enzyme
Primary referenceThe XMAP215 family drives microtubule polymerization using a structurally diverse TOG array., Fox JC, Howard AE, Currie JD, Rogers SL, Slep KC, Mol Biol Cell. 2014 Jun 25. pii: mbc.E13-08-0501. PMID:24966168
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (42 Kb) [Save to disk]
  • Biological Unit Coordinates (4qmj.pdb1.gz) 38 Kb
  • LPC: Ligand-Protein Contacts for 4QMJ
  • CSU: Contacts of Structural Units for 4QMJ
  • Structure Factors (113 Kb)
  • Retrieve 4QMJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4QMJ from S2C, [Save to disk]
  • Re-refined 4qmj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4QMJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4QMJ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4QMJ, from MSDmotif at EBI
  • Fold representative 4qmj from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4qmj_A] [4qmj]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4QMJ: [TOG ] by SMART
  • Other resources with information on 4QMJ
  • Community annotation for 4QMJ at PDBWiki (http://pdbwiki.org)

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