4QWM Hydrolase date Jul 16, 2014
title Kinetic Crystallography Of Alpha_e7-Carboxylesterse From Luc Cuprina - Absorbed X-Ray Dose 1.85 Mgy
authors C.J.Jackson, P.D.Carr, M.Weik, T.Huber, T.Meirelles, G.Correy
compound source
Molecule: E3
Chain: A
Engineered: Yes
Mutation: Yes
Organism_scientific: Lucilia Cuprina
Organism_common: Greenbottle Fly
Organism_taxid: 7375
Strain: Ls2
Gene: Lcae7
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Petmcsiii
symmetry Space Group: C 2 2 21
R_factor 0.177 R_Free 0.234
crystal
cell
length a length b length c angle alpha angle beta angle gamma
48.490 101.000 222.059 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.17 Å
ligand DPF enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceMapping the Accessible Conformational Landscape of an Insect Carboxylesterase Using Conformational Ensemble Analysis and Kinetic Crystallography., Correy GJ, Carr PD, Meirelles T, Mabbitt PD, Fraser NJ, Weik M, Jackson CJ, Structure. 2016 Jun 7;24(6):977-87. doi: 10.1016/j.str.2016.04.009. Epub 2016 May, 19. PMID:27210287
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (100 Kb) [Save to disk]
  • Biological Unit Coordinates (4qwm.pdb1.gz) 95 Kb
  • LPC: Ligand-Protein Contacts for 4QWM
  • CSU: Contacts of Structural Units for 4QWM
  • Structure Factors (316 Kb)
  • Retrieve 4QWM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4QWM from S2C, [Save to disk]
  • Re-refined 4qwm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4QWM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4QWM
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4qwm_A] [4qwm]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4QWM
  • Community annotation for 4QWM at PDBWiki (http://pdbwiki.org)

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