4QX3 Cry3A Toxin structure obtained by injecting Bacillus thuringiensis cells in an XFEL beam, collecting data by serial femtosecond crystallographic methods and processing data with the CrystFEL software suite date
authors Sawaya, M.R., Cascio, D., Gingery, M., Rodriguez, J., Goldschmidt, L., Colletier, J.P., Messerschmidt, M., Boutet, S., Koglin, J.E., Williams, G.J., Brewster, A.S., Nass, K., Hattne, J., Botha, S., Doak, R.B., Shoeman, R.L., DePonte, D.P., Park, H.W., Federici, B.A., Sauter, N.K., Schlichting, I., Eisenberg, D.
compound source
symmetry
R_factor
R_Free 0.1940
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.90
Gene
Ontology
ChainFunctionProcessComponent
A
  • toxin activity


    • Primary referenceProtein crystal structure obtained at 2.9 A resolution from injecting bacterial cells into an X-ray free-electron laser beam., Sawaya MR, Cascio D, Gingery M, Rodriguez J, Goldschmidt L, Colletier JP, Messerschmidt MM, Boutet S, Koglin JE, Williams GJ, Brewster AS, Nass K, Hattne J, Botha S, Doak RB, Shoeman RL, DePonte DP, Park HW, Federici BA, Sauter NK, Schlichting I, Eisenberg DS, Proc Natl Acad Sci U S A. 2014 Aug 18. pii: 201413456. PMID:25136092
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (196 Kb) [Save to disk]
  • Biological Unit Coordinates (4qx3.pdb1.gz) 192 Kb
  • CSU: Contacts of Structural Units for 4QX3
  • Structure Factors (483 Kb)
  • Retrieve 4QX3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4QX3 from S2C, [Save to disk]
  • Re-refined 4qx3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4QX3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4QX3
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4QX3, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4qx3_A] [4qx3]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4QX3
  • Community annotation for 4QX3 at PDBWiki (http://pdbwiki.org)

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