4UY8 Molecular basis for the ribosome functioning as a L-tryptophan sensor - Cryo-EM structure of a TnaC stalled E.coli ribosome date
authors Bischoff, L., Berninghausen, O., Beckmann, R.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.80
ligand 5MU, MG, TRP, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
0


1


2


3


4


5


6


7


8


C


D


E


F


G


H


I


J


K


L


M


N


O


P


Q
  • translation repressor activi...


    • R


    S


    T


    U


    W


    X


    Y


    Z


    Primary referenceMolecular Basis for the Ribosome Functioning as an L-Tryptophan Sensor., Bischoff L, Berninghausen O, Beckmann R, Cell Rep. 2014 Oct 7. pii: S2211-1247(14)00779-7. doi:, 10.1016/j.celrep.2014.09.011. PMID:25310980
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1858 Kb) [Save to disk]
  • Biological Unit Coordinates (4uy8.pdb1.gz) 1835 Kb
  • LPC: Ligand-Protein Contacts for 4UY8
  • CSU: Contacts of Structural Units for 4UY8
  • Retrieve 4UY8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4UY8 from S2C, [Save to disk]
    • View 4UY8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4UY8
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4UY8, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4uy8] [4uy8_M] [4uy8_V] [4uy8_I] [4uy8_S] [4uy8_7] [4uy8_A] [4uy8_Y] [4uy8_8] [4uy8_Q] [4uy8_R] [4uy8_B] [4uy8_Z] [4uy8_0] [4uy8_6] [4uy8_4] [4uy8_W] [4uy8_P] [4uy8_2] [4uy8_5] [4uy8_G] [4uy8_N] [4uy8_1] [4uy8_E] [4uy8_3] [4uy8_O] [4uy8_U] [4uy8_L] [4uy8_D] [4uy8_X] [4uy8_J] [4uy8_K] [4uy8_F] [4uy8_C] [4uy8_H] [4uy8_T]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4UY8: [KOW] [RL11] [Ribosomal_L14] [Ribosomal_L2] [Ribosomal_L2_C ] by SMART
    • Other resources with information on 4UY8
  • Community annotation for 4UY8 at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science