4UYB Transport Protein date Aug 29, 2014
title Crystal Structure Of Sec14-Like Protein 3
authors J.Kopec, S.Goubin, T.Krojer, N.Burgess-Brown, F.Von Delft, C.Arro A.Edwards, C.Bountra, W.W.Yue
compound source
Molecule: Sec14-Like Protein 3
Chain: A
Synonym: Sec14l3c, Tocopherol-Associated Protein 2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_variant: Rosetta
Expression_system_plasmid: Pnic28-Bsa
symmetry Space Group: P 41 21 2
R_factor 0.140 R_Free 0.178
crystal
cell
length a length b length c angle alpha angle beta angle gamma
83.243 83.243 174.363 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand EDO, UNL enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (172 Kb) [Save to disk]
  • Biological Unit Coordinates (4uyb.pdb1.gz) 166 Kb
  • LPC: Ligand-Protein Contacts for 4UYB
  • CSU: Contacts of Structural Units for 4UYB
  • Structure Factors (5228 Kb)
  • Retrieve 4UYB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4UYB from S2C, [Save to disk]
  • Re-refined 4uyb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4UYB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4UYB
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4UYB, from MSDmotif at EBI
  • Fold representative 4uyb from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4uyb] [4uyb_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4UYB: [CRAL_TRIO_N] [SEC14 ] by SMART
  • Other resources with information on 4UYB
  • Community annotation for 4UYB at PDBWiki (http://pdbwiki.org)

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