4V3D	The CIDRa domain from HB3var03 PfEMP1 bound to endothelial protein C receptor	date
authors	Lau, C.K.Y., Turner, L., Jespersen, J.S., Lowe, E.D., Petersen, B., Wang, C.W., Petersen, J.E.V., Lusingu, J., Theander, T.G., Lavstsen, T., Higgins, M.K.
compound		source
symmetry		R_factor R_Free 0.2552
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	2.65
ligand	MAN, NAG, PTY	enzyme
Gene Ontology	Chain Function Process Component D, B
Primary reference	Structural Conservation Despite Huge Sequence Diversity Allows EPCR Binding by the PfEMP1 Family Implicated in Severe Childhood Malaria., Lau CK, Turner L, Jespersen JS, Lowe ED, Petersen B, Wang CW, Petersen JE, Lusingu J, Theander TG, Lavstsen T, Higgins MK, Cell Host Microbe. 2014 Dec 3. pii: S1931-3128(14)00423-5. doi:, 10.1016/j.chom.2014.11.007. PMID:25482433

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (275 Kb) [Save to disk] Biological Unit Coordinates (4v3d.pdb1.gz) 133 Kb Biological Unit Coordinates (4v3d.pdb2.gz) 137 Kb LPC: Ligand-Protein Contacts for 4V3D CSU: Contacts of Structural Units for 4V3D Structure Factors (464 Kb) Retrieve 4V3D in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4V3D from S2C, [Save to disk] Re-refined 4v3d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4V3D in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4V3D

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4V3D, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4v3d_A] [4v3d_C] [4v3d_D] [4v3d_B] [4v3d] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 4V3D

Community annotation for 4V3D at PDBWiki (http://pdbwiki.org)

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