4WHV	E3 ubiquitin-protein ligase RNF8 in complex with Ubiquitin-conjugating enzyme E2 N and Polyubiquitin-B	date
authors	Hodge, C.D., Edwards, R.A., Glover, J.N.M.
compound		source
symmetry		R_factor R_Free 0.3374
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	8.30
ligand	ZN	enzyme
Gene Ontology	Chain Function Process Component H, K, E, B
Primary reference	RNF8 E3 Ubiquitin Ligase Stimulates Ubc13 E2 Conjugating Activity that is Essential for DNA Double-Strand Break Signaling and BRCA1 Tumor Suppressor Recruitment., Hodge CD, Ismail IH, Edwards RA, Hura GL, Xiao AT, Tainer JA, Hendzel MJ, Glover JN, J Biol Chem. 2016 Feb 22. pii: jbc.M116.715698. PMID:26903517

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (419 Kb) [Save to disk] Biological Unit Coordinates (4whv.pdb1.gz) 215 Kb Biological Unit Coordinates (4whv.pdb2.gz) 197 Kb LPC: Ligand-Protein Contacts for 4WHV CSU: Contacts of Structural Units for 4WHV Structure Factors (68 Kb) Retrieve 4WHV in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4WHV from S2C, [Save to disk] Re-refined 4whv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4WHV in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4WHV

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4whv_E] [4whv_J] [4whv_L] [4whv] [4whv_C] [4whv_K] [4whv_I] [4whv_G] [4whv_F] [4whv_A] [4whv_H] [4whv_D] [4whv_B] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 4WHV: [RING] [UBCc] [UBQ ] by SMART

Other resources with information on 4WHV

Community annotation for 4WHV at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---