OCA Atlas for 4WJV

4WJV

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

GLC, SO4

enzyme

Gene
Ontology

Chain	Function	Process	Component
G, H, E, F	carbohydrate transmembrane t...

Primary reference

A network of assembly factors is involved in remodeling rRNA elements during preribosome maturation., Bassler J, Paternoga H, Holdermann I, Thoms M, Granneman S, Barrio-Garcia C, Nyarko A, Stier G, Clark SA, Schraivogel D, Kallas M, Beckmann R, Tollervey D, Barbar E, Sinning I, Hurt E, J Cell Biol. 2014 Nov 24;207(4):481-98. doi: 10.1083/jcb.201408111. Epub 2014 Nov, 17. PMID:25404745

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (988 Kb) [Save to disk]

Biological Unit Coordinates (4wjv.pdb1.gz) 135 Kb

Biological Unit Coordinates (4wjv.pdb2.gz) 130 Kb

Biological Unit Coordinates (4wjv.pdb3.gz) 134 Kb

Biological Unit Coordinates (4wjv.pdb4.gz) 132 Kb

Biological Unit Coordinates (4wjv.pdb5.gz) 122 Kb

Biological Unit Coordinates (4wjv.pdb6.gz) 123 Kb

Biological Unit Coordinates (4wjv.pdb7.gz) 123 Kb

Biological Unit Coordinates (4wjv.pdb8.gz) 125 Kb

LPC: Ligand-Protein Contacts for 4WJV

CSU: Contacts of Structural Units for 4WJV

Structure Factors (984 Kb)

Retrieve 4WJV in mmCIF format [Save to disk]

Re-refined 4wjv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4WJV in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4wjv] [4wjv_A] [4wjv_B] [4wjv_C] [4wjv_D] [4wjv_E] [4wjv_F] [4wjv_G] [4wjv_H] [4wjv_I] [4wjv_J] [4wjv_K] [4wjv_L]

SWISS-PROT database:

Domain found in 4WJV: [WD40 ] by SMART

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