OCA Atlas for 4WKM

4WKM

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

API, DAL, FGA, GOL, MUB

enzyme

Gene

D186

Primary reference

The beta-lactamase Gene Regulator AmpR is a Tetramer that Recognizes and Binds the D-Ala-D-Ala Motif of its Repressor UDP-MurNAc-pentapeptide., Vadlamani G, Thomas MD, Patel TR, Donald LJ, Reeve TM, Stetefeld J, Standing KG, Vocadlo DJ, Mark BL, J Biol Chem. 2014 Dec 5. pii: jbc.M114.618199. PMID:25480792

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (511 Kb) [Save to disk]

Biological Unit Coordinates (4wkm.pdb1.gz) 126 Kb

Biological Unit Coordinates (4wkm.pdb2.gz) 128 Kb

Biological Unit Coordinates (4wkm.pdb3.gz) 129 Kb

Biological Unit Coordinates (4wkm.pdb4.gz) 129 Kb

LPC: Ligand-Protein Contacts for 4WKM

CSU: Contacts of Structural Units for 4WKM

Structure Factors (6865 Kb)

Retrieve 4WKM in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 4WKM from S2C, [Save to disk]

Re-refined 4wkm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4WKM in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4wkm] [4wkm_A] [4wkm_B] [4wkm_C] [4wkm_D] [4wkm_E] [4wkm_F] [4wkm_G] [4wkm_H] [4wkm_I] [4wkm_J] [4wkm_K] [4wkm_L] [4wkm_M] [4wkm_N] [4wkm_O] [4wkm_P]

SWISS-PROT database:

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