4WNF Signaling Protein Protein Binding date Oct 11, 2014
title Crystal Structure Of The Oxidized Tpr Domain Of Lgn In Compl Frmpd4preso1 At 2.9 Angstrom Resolution
authors H.Takayanagi, S.Yuzawa, H.Sumimoto
compound source
Molecule: G-Protein-Signaling Modulator 2
Chain: A
Fragment: N-Terminal Tpr Domain, Unp Residues 20-421
Synonym: Mosaic Protein Lgn
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gpsm2, Lgn
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Prsfduet-1

Molecule: Ferm And Pdz Domain-Containing Protein 4
Chain: B
Fragment: Frmpd4-L, Unp Residues 978-1025
Synonym: Pdz Domain-Containing Protein 10,Psd-95-Interactin Regulator Of Spine Morphogenesis,Preso;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Frmpd4, Kiaa0316, Pdzd10, Pdzk10
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-6p-2
symmetry Space Group: P 61 2 2
R_factor 0.237 R_Free 0.280
crystal
cell
length a length b length c angle alpha angle beta angle gamma
92.599 92.599 175.238 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.90 Å
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (49 Kb) [Save to disk]
  • Biological Unit Coordinates (4wnf.pdb1.gz) 43 Kb
  • CSU: Contacts of Structural Units for 4WNF
  • Structure Factors (177 Kb)
  • Retrieve 4WNF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4WNF from S2C, [Save to disk]
  • Re-refined 4wnf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4WNF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4WNF
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 4wnf from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4wnf_B] [4wnf_A] [4wnf]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4WNF: [TPR ] by SMART
  • Other resources with information on 4WNF
  • Community annotation for 4WNF at PDBWiki (http://pdbwiki.org)

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