4XVM Binary complex of human polymerase nu and DNA with the finger domain closed and thumb domain rotated out date
authors Lee, Y.S., Yang, W.
compound source
symmetry
R_factor
R_Free 0.2812
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.20
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceHow a homolog of high-fidelity replicases conducts mutagenic DNA synthesis., Lee YS, Gao Y, Yang W, Nat Struct Mol Biol. 2015 Mar 16. doi: 10.1038/nsmb.2985. PMID:25775266
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (113 Kb) [Save to disk]
  • Biological Unit Coordinates (4xvm.pdb1.gz) 108 Kb
  • CSU: Contacts of Structural Units for 4XVM
  • Structure Factors (447 Kb)
  • Retrieve 4XVM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4XVM from S2C, [Save to disk]
  • Re-refined 4xvm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4XVM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4XVM
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4XVM, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4xvm_A] [4xvm_P] [4xvm_T] [4xvm]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4XVM: [POLAc ] by SMART
  • Other resources with information on 4XVM
  • Community annotation for 4XVM at PDBWiki (http://pdbwiki.org)

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