4Y00 Crystal Structure of Human TDP-43 RRM1 Domain with D169G Mutation in Complex with an Unmodified Single-stranded DNA date
authors Chiang, C.H., Kuo, P.H., Yang, W.Z., Yuan, H.S.
compound source
symmetry
R_factor
R_Free 0.2949
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.00
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructural analysis of disease-related TDP-43 D169G mutation: linking enhanced stability and caspase cleavage efficiency to protein accumulation., Chiang CH, Grauffel C, Wu LS, Kuo PH, Doudeva LG, Lim C, Shen CK, Yuan HS, Sci Rep. 2016 Feb 17;6:21581. doi: 10.1038/srep21581. PMID:26883171
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (118 Kb) [Save to disk]
  • Biological Unit Coordinates (4y00.pdb1.gz) 31 Kb
  • Biological Unit Coordinates (4y00.pdb2.gz) 31 Kb
  • Biological Unit Coordinates (4y00.pdb3.gz) 28 Kb
  • Biological Unit Coordinates (4y00.pdb4.gz) 28 Kb
  • CSU: Contacts of Structural Units for 4Y00
  • Structure Factors (226 Kb)
  • Retrieve 4Y00 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4Y00 from S2C, [Save to disk]
  • Re-refined 4y00 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4Y00 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4Y00
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4y00_F] [4y00_C] [4y00_H] [4y00_G] [4y00_A] [4y00_D] [4y00_B] [4y00] [4y00_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4Y00: [RRM ] by SMART
    • Other resources with information on 4Y00
  • Community annotation for 4Y00 at PDBWiki (http://pdbwiki.org)

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