4Y1L Ubc9 Homodimer The Missing Link in Poly-SUMO Chain Formation date
authors Aileen, Y.A., Ambaye, N.D., Li, Y.J., Vega, R., Bzymek, K., Williams, J.C., Hu, W., Chen, Y.
compound source
symmetry
R_factor
R_Free 0.2782
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.70
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • SUMO conjugating enzyme acti...


    • C


    Primary referenceRWD Domain as an E2 (Ubc9)-Interaction Module., Alontaga AY, Ambaye ND, Li YJ, Vega R, Chen CH, Bzymek KP, Williams JC, Hu W, Chen Y, J Biol Chem. 2015 Apr 27. pii: jbc.M115.644047. PMID:25918163
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (152 Kb) [Save to disk]
  • Biological Unit Coordinates (4y1l.pdb1.gz) 147 Kb
  • CSU: Contacts of Structural Units for 4Y1L
  • Structure Factors (222 Kb)
  • Retrieve 4Y1L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4Y1L from S2C, [Save to disk]
  • Re-refined 4y1l structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4Y1L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4Y1L
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4Y1L, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4y1l] [4y1l_B] [4y1l_C] [4y1l_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4Y1L: [RWD] [UBCc ] by SMART
    • Other resources with information on 4Y1L
  • Community annotation for 4Y1L at PDBWiki (http://pdbwiki.org)

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