4YC7 Signaling Protein date Feb 19, 2015
title Crystal Structure Of Human Fmnl2 Gbd-Fh3 Domains Bound To Cd
authors S.Kuhn, M.Geyer
compound source
Molecule: Formin-Like Protein 2
Chain: B
Fragment: Unp Residues 1-379
Synonym: Formin Homology 2 Domain-Containing Protein 2, Fmn
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fmnl2, Fhod2, Kiaa1902
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Cell Division Control Protein 42 Homolog
Chain: A
Fragment: Unp Residues 1-179
Synonym: G25k Gtp-Binding Protein, Cdc42
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cdc42
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 41 21 2
R_factor 0.194 R_Free 0.253
crystal
cell
length a length b length c angle alpha angle beta angle gamma
91.094 91.094 144.275 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand GNP, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • ubiquitin protein ligase act...


  • B


    Primary referenceThe structure of FMNL2-Cdc42 yields insights into the mechanism of lamellipodia and filopodia formation., Kuhn S, Erdmann C, Kage F, Block J, Schwenkmezger L, Steffen A, Rottner K, Geyer M, Nat Commun. 2015 May 12;6:7088. doi: 10.1038/ncomms8088. PMID:25963737
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (170 Kb) [Save to disk]
  • Biological Unit Coordinates (4yc7.pdb1.gz) 163 Kb
  • LPC: Ligand-Protein Contacts for 4YC7
  • CSU: Contacts of Structural Units for 4YC7
  • Structure Factors (368 Kb)
  • Retrieve 4YC7 in mmCIF format [Save to disk]
  • Re-refined 4yc7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4YC7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4YC7
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4YC7, from MSDmotif at EBI
  • Fold representative 4yc7 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4yc7_A] [4yc7_B] [4yc7]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4YC7: [Drf_FH3] [Drf_GBD] [RHO ] by SMART
  • Other resources with information on 4YC7
  • Community annotation for 4YC7 at PDBWiki (http://pdbwiki.org)

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