4YET Oxidoreductase date Feb 24, 2015
title X-Ray Crystal Structure Of Superoxide Dismutase From Babesia Solved By Sulfur Sad
authors J.W.Fairman, M.C.Clifton, J.Abendroth, T.E.Edwards, D.Lorimer, Se Structural Genomics Center For Infectious Disease (Ssgcid)
compound source
Molecule: Superoxide Dismutase
Chain: A, B
Engineered: Yes
Organism_scientific: Babesia Bovis
Organism_taxid: 5865
Gene: Fe-Sod, Bbov_iv011480
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.143 R_Free 0.176
length a length b length c angle alpha angle beta angle gamma
55.750 69.090 114.810 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.75 Å
ligand FE enzyme Oxidoreductase E.C. BRENDA
note 4YET supersedes 4K2W
A, B
  • superoxide dismutase activit...

  • Primary referenceIron superoxide dismutases in eukaryotic pathogens: new insights from Apicomplexa and Trypanosoma structures., Phan IQ, Davies DR, Moretti NS, Shanmugam D, Cestari I, Anupama A, Fairman JW, Edwards TE, Stuart K, Schenkman S, Myler PJ, Acta Crystallogr F Struct Biol Commun. 2015 May;71(Pt 5):615-21. doi:, 10.1107/S2053230X15004185. Epub 2015 May 7. PMID:25961325
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (146 Kb) [Save to disk]
  • Biological Unit Coordinates (4yet.pdb1.gz) 139 Kb
  • LPC: Ligand-Protein Contacts for 4YET
  • CSU: Contacts of Structural Units for 4YET
  • Structure Factors (673 Kb)
  • Retrieve 4YET in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4YET from S2C, [Save to disk]
  • Re-refined 4yet structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
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  • Visual 3D analysis of 4YET
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4YET, from MSDmotif at EBI
  • Fold representative 4yet from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4yet] [4yet_B] [4yet_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4YET
  • Community annotation for 4YET at PDBWiki (http://pdbwiki.org)

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