4YPR Crystal Structure of D144N MutY bound to its anti-substrate date
authors Wang, L., Lee, S., Verdine, G.L.
compound source
symmetry
R_factor
R_Free 0.2280
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.59
ligand 8OG, SF4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural Basis for Avoidance of Promutagenic DNA Repair by MutY Adenine DNA Glycosylase., Wang L, Lee SJ, Verdine G, J Biol Chem. 2015 May 20. pii: jbc.M115.657866. PMID:25995449
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (277 Kb) [Save to disk]
  • Biological Unit Coordinates (4ypr.pdb1.gz) 137 Kb
  • Biological Unit Coordinates (4ypr.pdb2.gz) 136 Kb
  • LPC: Ligand-Protein Contacts for 4YPR
  • CSU: Contacts of Structural Units for 4YPR
  • Structure Factors (2598 Kb)
  • Retrieve 4YPR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4YPR from S2C, [Save to disk]
  • Re-refined 4ypr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4YPR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4YPR
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4YPR, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ypr] [4ypr_A] [4ypr_B] [4ypr_D] [4ypr_E] [4ypr_F] [4ypr_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4YPR: [ENDO3c] [FES ] by SMART
  • Other resources with information on 4YPR
  • Community annotation for 4YPR at PDBWiki (http://pdbwiki.org)

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