4YPV High-resolution structure of a metagenome-derived esterase Est8 date
authors Pereira, M.R., Maester, C.T., Lemos, E.Macedo., Hyvonen, M., Balan, A.
compound source
symmetry
R_factor
R_Free 0.1806
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.85
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceFrom a metagenomic source to a high-resolution structure of a novel alkaline esterase., Pereira MR, Maester TC, Mercaldi GF, de Macedo Lemos EG, Hyvonen M, Balan A, Appl Microbiol Biotechnol. 2017 Mar 22. doi: 10.1007/s00253-017-8226-4. PMID:28331945
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (107 Kb) [Save to disk]
  • Biological Unit Coordinates (4ypv.pdb1.gz) 102 Kb
  • CSU: Contacts of Structural Units for 4YPV
  • Structure Factors (556 Kb)
  • Retrieve 4YPV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4YPV from S2C, [Save to disk]
  • Re-refined 4ypv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4YPV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4YPV
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ypv] [4ypv_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4YPV
  • Community annotation for 4YPV at PDBWiki (http://pdbwiki.org)

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