4YVD Crytsal structure of human Pleiotropic Regulator 1 (PRL1) date
authors Dong, A., Zeng, H., Xu, C., Tempel, W., Li, Y., He, H., Bountra, C., Arrowsmith, C.H., Edwards, A.M., Brown, P.J., Min, J., Wu, H., SGC, Structural.Genomics.Consortium.
compound source
symmetry
R_factor
R_Free 0.220
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.70
ligand CL, NA, UNX enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (105 Kb) [Save to disk]
  • Biological Unit Coordinates (4yvd.pdb1.gz) 197 Kb
  • LPC: Ligand-Protein Contacts for 4YVD
  • CSU: Contacts of Structural Units for 4YVD
  • Structure Factors (1471 Kb)
  • Retrieve 4YVD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4YVD from S2C, [Save to disk]
  • Re-refined 4yvd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4YVD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4YVD
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4YVD, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4yvd] [4yvd_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4YVD: [WD40 ] by SMART
    • Other resources with information on 4YVD
  • Community annotation for 4YVD at PDBWiki (http://pdbwiki.org)

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