4YYM Crystal structure of TAF1 BD2 Bromodomain bound to a butyryllysine peptide date
authors Tang, Y., Bellon, S., Cochran, A.G., Poy, F.
compound source
symmetry
R_factor
R_Free 0.2607
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.50
ligand BTK, CA enzyme
Primary referenceA Subset of Human Bromodomains Recognizes Butyryllysine and Crotonyllysine Histone Peptide Modifications., Flynn EM, Huang OW, Poy F, Oppikofer M, Bellon SF, Tang Y, Cochran AG, Structure. 2015 Sep 4. pii: S0969-2126(15)00329-9. doi:, 10.1016/j.str.2015.08.004. PMID:26365797
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (98 Kb) [Save to disk]
  • Biological Unit Coordinates (4yym.pdb1.gz) 92 Kb
  • LPC: Ligand-Protein Contacts for 4YYM
  • CSU: Contacts of Structural Units for 4YYM
  • Structure Factors (896 Kb)
  • Retrieve 4YYM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4YYM from S2C, [Save to disk]
  • Re-refined 4yym structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4YYM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4YYM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4yym] [4yym_A] [4yym_Z] [4yym_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4YYM: [BROMO ] by SMART
    • Other resources with information on 4YYM
  • Community annotation for 4YYM at PDBWiki (http://pdbwiki.org)

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