4ZRV Structure of cow mincle CRD complexed with trehalose mono butyrate date
authors Feinberg, H., Rambaruth, N.D.S., Taylor, M.E., Drickamer, K., Weis, W.I.
compound source
symmetry
R_factor
R_Free 0.2076
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.10
ligand ACT, CA, GLC, U8V enzyme
Primary referenceBinding sites for acylated trehalose analogs of glycolipid ligands on an extended carbohydrate-recognition domain of the macrophage receptor mincle., Feinberg H, Rambaruth ND, Jegouzo SA, Jacobsen KM, Djurhuus R, Poulsen TB, Weis WI, Taylor ME, Drickamer K, J Biol Chem. 2016 Aug 19. pii: jbc.M116.749515. PMID:27542410
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (82 Kb) [Save to disk]
  • Biological Unit Coordinates (4zrv.pdb1.gz) 27 Kb
  • Biological Unit Coordinates (4zrv.pdb2.gz) 27 Kb
  • Biological Unit Coordinates (4zrv.pdb3.gz) 26 Kb
  • Biological Unit Coordinates (4zrv.pdb4.gz) 75 Kb
  • LPC: Ligand-Protein Contacts for 4ZRV
  • CSU: Contacts of Structural Units for 4ZRV
  • Structure Factors (273 Kb)
  • Retrieve 4ZRV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4ZRV from S2C, [Save to disk]
  • Re-refined 4zrv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4ZRV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4ZRV
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4zrv] [4zrv_A] [4zrv_C] [4zrv_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4ZRV: [CLECT ] by SMART
    • Other resources with information on 4ZRV
  • Community annotation for 4ZRV at PDBWiki (http://pdbwiki.org)

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