5A3F Endocytosis date May 29, 2015
title Crystal Structure Of The Dynamin Tetramer
authors T.F.Reubold, K.Faelber, N.Plattner, Y.Posor, K.Branz, U.Curth, J.S R.Anand, D.J.Manstein, F.Noe, V.Haucke, O.Daumke, S.Eschenburg
compound source
Molecule: Dynamin 3
Chain: A, B, C, D
Fragment: Dynamin 3 - Delta Prd, Unp Residues 1-764
Synonym: Dynamin
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector: Pproex-Htb
symmetry Space Group: P 21 21 21
R_factor 0.2316 R_Free 0.2784
length a length b length c angle alpha angle beta angle gamma
97.696 98.002 401.524 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.70 Å
enzyme Hydrolase E.C. BRENDA
A, D, C, B

Primary referenceCrystal structure of the dynamin tetramer., Reubold TF, Faelber K, Plattner N, Posor Y, Ketel K, Curth U, Schlegel J, Anand R, Manstein DJ, Noe F, Haucke V, Daumke O, Eschenburg S, Nature. 2015 Aug 24. doi: 10.1038/nature14880. PMID:26302298
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (836 Kb) [Save to disk]
  • Biological Unit Coordinates (5a3f.pdb1.gz) 823 Kb
  • CSU: Contacts of Structural Units for 5A3F
  • Structure Factors (437 Kb)
  • Retrieve 5A3F in mmCIF format [Save to disk]
  • Re-refined 5a3f structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5A3F in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5A3F
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5a3f from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5a3f_D] [5a3f_C] [5a3f_A] [5a3f_B] [5a3f]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5A3F: [DYNc] [GED] [PH ] by SMART
  • Other resources with information on 5A3F
  • Community annotation for 5A3F at PDBWiki (http://pdbwiki.org)

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