5A6N Crystal structure of human death associated protein kinase 3 (DAPK3) in complex with compound 2 date
authors Rodrigues, T., Reker, D., Welin, M., Caldera, M., Brunner, C., Gabernet, G., Schneider, P., Walse, B., Schneider, G.
compound source
symmetry
R_factor
R_Free 0.21335
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.70
ligand GOL, PGO, U7E enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceDe Novo Fragment Design for Drug Discovery and Chemical Biology., Rodrigues T, Reker D, Welin M, Caldera M, Brunner C, Gabernet G, Schneider P, Walse B, Schneider G, Angew Chem Int Ed Engl. 2015 Oct 21. doi: 10.1002/anie.201508055. PMID:26486226
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (99 Kb) [Save to disk]
  • Biological Unit Coordinates (5a6n.pdb1.gz) 94 Kb
  • LPC: Ligand-Protein Contacts for 5A6N
  • CSU: Contacts of Structural Units for 5A6N
  • Structure Factors (1341 Kb)
  • Retrieve 5A6N in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5A6N from S2C, [Save to disk]
  • Re-refined 5a6n structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5A6N in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5A6N
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5a6n] [5a6n_B] [5a6n_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5A6N: [S_TKc ] by SMART
  • Other resources with information on 5A6N
  • Community annotation for 5A6N at PDBWiki (http://pdbwiki.org)

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