5A7R	Hydrolase	date	Jul 09, 2015
title	Human Poly(Adp-Ribose) Glycohydrolase In Complex With Synthetic Dimeric Adp-Ribose
authors	M.J.Lambrecht, M.Brichacek, E.Barkauskaite, A.Ariza, I.Ahel, P.J.Hergenrother
compound		source
Molecule: Poly(Adp-Ribose) Glycohydrolase Chain: A Ec: 3.2.1.143 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_variant: Rosetta Plyss Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28a
symmetry	Space Group: P 21 21 21	R_factor 0.13730 R_Free 0.17890
crystal cell	length a length b length c angle alpha angle beta angle gamma 67.457 91.277 96.123 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.95 Å
ligand	AR6, BME, GOL, PPI, SO4	enzyme	Hydrolase E.C.3.2.1.143 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Synthesis of dimeric ADP-ribose and its structure with human poly(ADP-ribose) glycohydrolase., Lambrecht MJ, Brichacek M, Barkauskaite E, Ariza A, Ahel I, Hergenrother PJ, J Am Chem Soc. 2015 Mar 18;137(10):3558-64. doi: 10.1021/ja512528p. Epub 2015 Mar, 4. PMID:25706250

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (105 Kb) [Save to disk] Biological Unit Coordinates (5a7r.pdb1.gz) 98 Kb LPC: Ligand-Protein Contacts for 5A7R CSU: Contacts of Structural Units for 5A7R Structure Factors (2340 Kb) Retrieve 5A7R in mmCIF format [Save to disk] Re-refined 5a7r structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5A7R in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5A7R

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute Fold representative 5a7r from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5a7r] [5a7r_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5A7R

Community annotation for 5A7R at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014 Bioinformatics Unit Weizmann Institute of Science

---