OCA Atlas for 5AA2

5AA2

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

AH0, API, CL, DAL, DGL

enzyme

Gene
Ontology

Chain	Function	Process	Component
A, C, B, D

Primary reference

Activation by Allostery in Cell-Wall Remodeling by a Modular Membrane-Bound Lytic Transglycosylase from Pseudomonas aeruginosa., Dominguez-Gil T, Lee M, Acebron-Avalos I, Mahasenan KV, Hesek D, Dik DA, Byun B, Lastochkin E, Fisher JF, Mobashery S, Hermoso JA, Structure. 2016 Oct 4;24(10):1729-1741. doi: 10.1016/j.str.2016.07.019. Epub 2016, Sep 8. PMID:27618662

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (563 Kb) [Save to disk]

Biological Unit Coordinates (5aa2.pdb1.gz) 144 Kb

Biological Unit Coordinates (5aa2.pdb2.gz) 140 Kb

Biological Unit Coordinates (5aa2.pdb3.gz) 143 Kb

Biological Unit Coordinates (5aa2.pdb4.gz) 141 Kb

LPC: Ligand-Protein Contacts for 5AA2

CSU: Contacts of Structural Units for 5AA2

Structure Factors (1049 Kb)

Retrieve 5AA2 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5AA2 from S2C, [Save to disk]

Re-refined 5aa2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5AA2 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5aa2_A] [5aa2] [5aa2_B] [5aa2_C] [5aa2_D] [5aa2_E]

SWISS-PROT database:

Domain found in 5AA2: [PBPb ] by SMART

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