5AA7 Structural and functional characterization of a chitin-active 15.5 kDa lytic polysaccharide monooxygenase domain from a modular chitinase from Jonesia denitrificans date
authors Mekasha, S., Forsberg, Z., Dalhus, B., Choudhary, S., Schmidt-Dannert, C., Vaaje-Kolstad, G., Eijsink, V.
compound source
symmetry
R_factor
R_Free 0.1743
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.55
ligand CU1 enzyme
Primary referenceStructural and functional characterization of a small chitin-active lytic polysaccharide monooxygenase domain of a multi-modular chitinase from Jonesia denitrificans., Mekasha S, Forsberg Z, Dalhus B, Bacik JP, Choudhary S, Schmidt-Dannert C, Vaaje-Kolstad G, Eijsink VG, FEBS Lett. 2016 Jan;590(1):34-42. doi: 10.1002/1873-3468.12025. Epub 2015 Dec 28. PMID:26763108
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk]
  • Biological Unit Coordinates (5aa7.pdb1.gz) 27 Kb
  • Biological Unit Coordinates (5aa7.pdb2.gz) 26 Kb
  • LPC: Ligand-Protein Contacts for 5AA7
  • CSU: Contacts of Structural Units for 5AA7
  • Structure Factors (1020 Kb)
  • Retrieve 5AA7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5AA7 from S2C, [Save to disk]
  • Re-refined 5aa7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5AA7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5AA7
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5aa7_A] [5aa7] [5aa7_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5AA7
  • Community annotation for 5AA7 at PDBWiki (http://pdbwiki.org)

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