5AFM alpha7-AChBP in complex with lobeline and fragment 4 date
authors Spurny, R., Debaveye, S., Farinha, A., Veys, K., Gossas, T., Atack, J., Bertrand, D., Kemp, J., Vos, A., Danielson, U.H., Tresadern, G., Ulens, C.
compound source
symmetry
R_factor
R_Free 0.2172
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.85
ligand 9Z0, GOL, L0B, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, E, B


Primary referenceMolecular blueprint of allosteric binding sites in a homologue of the agonist-binding domain of the alpha7 nicotinic acetylcholine receptor., Spurny R, Debaveye S, Farinha A, Veys K, Vos AM, Gossas T, Atack J, Bertrand S, Bertrand D, Danielson UH, Tresadern G, Ulens C, Proc Natl Acad Sci U S A. 2015 Apr 27. pii: 201418289. PMID:25918415
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (376 Kb) [Save to disk]
  • Biological Unit Coordinates (5afm.pdb1.gz) 368 Kb
  • LPC: Ligand-Protein Contacts for 5AFM
  • CSU: Contacts of Structural Units for 5AFM
  • Structure Factors (465 Kb)
  • Retrieve 5AFM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5AFM from S2C, [Save to disk]
  • Re-refined 5afm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5AFM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5AFM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 5AFM, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5afm_E] [5afm_D] [5afm_C] [5afm_B] [5afm_A] [5afm]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5AFM
  • Community annotation for 5AFM at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science