5AKA EM structure of ribosome-SRP-FtsY complex in closed state date
authors Loeffelholz, O.von., Jiang, Q., Ariosa, A., Karuppasamy, M., Huard, K., Berger, I., Shan, S., Schaffitzel, C.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 5.70
ligand MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
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    Primary referenceRibosome-SRP-FtsY cotranslational targeting complex in the closed state., von Loeffelholz O, Jiang Q, Ariosa A, Karuppasamy M, Huard K, Berger I, Shan SO, Schaffitzel C, Proc Natl Acad Sci U S A. 2015 Mar 16. pii: 201424453. PMID:25775537
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1673 Kb) [Save to disk]
  • Biological Unit Coordinates (5aka.pdb1.gz) 1651 Kb
  • LPC: Ligand-Protein Contacts for 5AKA
  • CSU: Contacts of Structural Units for 5AKA
  • Retrieve 5AKA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5AKA from S2C, [Save to disk]
    • View 5AKA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5AKA
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 5AKA, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5aka_V] [5aka_3] [5aka_J] [5aka_P] [5aka_Y] [5aka_0] [5aka_7] [5aka_6] [5aka_G] [5aka_A] [5aka_C] [5aka_H] [5aka_R] [5aka_D] [5aka_E] [5aka_O] [5aka_Z] [5aka_K] [5aka_L] [5aka_T] [5aka_M] [5aka] [5aka_I] [5aka_W] [5aka_5] [5aka_S] [5aka_Q] [5aka_F] [5aka_4] [5aka_2] [5aka_U] [5aka_1] [5aka_B] [5aka_X] [5aka_N]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5AKA: [KOW] [RL11] [Ribosomal_L14] [Ribosomal_L2] [Ribosomal_L2_C ] by SMART
    • Other resources with information on 5AKA
  • Community annotation for 5AKA at PDBWiki (http://pdbwiki.org)

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