5AMR	Hydrolase	date	Mar 12, 2015
title	Structure Of The La Crosse Bunyavirus Polymerase In Complex 3' Viral Rna
authors	J.Reguera, P.Gerlach, S.Cusack
compound		source
Molecule: Rna Polymerase L Chain: A Ec: 2.7.7.48 Engineered: Yes		Organism_scientific: Bunyavirus La Crosse Organism_taxid: 11577 Expression_system: Trichoplusia Ni Expression_system_common: Cabbage Looper Expression_system_taxid: 7111 Expression_system_cell_line: High Five Expression_system_vector_type: Baculovirus Expression_system_plasmid: Pfastbac
Molecule: Rna Chain: B Engineered: Yes		Organism_scientific: Bunyavirus La Crosse Organism_taxid: 11577 Expression_system: Trichoplusia Ni Expression_system_common: Cabbage Looper Expression_system_taxid: 7111 Expression_system_cell_line: High Five Expression_system_vector_type: Baculovirus Expression_system_plasmid: Pfastbac
Molecule: Rna Chain: C Engineered: Yes		Organism_scientific: Bunyavirus La Crosse Organism_taxid: 11577 Expression_system: Trichoplusia Ni Expression_system_common: Cabbage Looper Expression_system_taxid: 7111 Expression_system_cell_line: High Five Expression_system_vector_type: Baculovirus Expression_system_plasmid: Pfastbac
symmetry	Space Group: P 21 21 21	R_factor 0.204 R_Free 0.252
crystal cell	length a length b length c angle alpha angle beta angle gamma 102.000 140.700 162.400 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.57 Å
ligand		enzyme	Transferase E.C.2.7.7.48 BRENDA
Gene Ontology	Chain Function Process Component A RNA-directed 5'-3' RNA polym...
Primary reference	Structural Insights into Bunyavirus Replication and Its Regulation by the vRNA Promoter., Gerlach P, Malet H, Cusack S, Reguera J, Cell. 2015 May 20. pii: S0092-8674(15)00553-X. doi: 10.1016/j.cell.2015.05.006. PMID:26004069

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (297 Kb) [Save to disk] Biological Unit Coordinates (5amr.pdb1.gz) 288 Kb CSU: Contacts of Structural Units for 5AMR Structure Factors (2098 Kb) Retrieve 5AMR in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5AMR from S2C, [Save to disk] Re-refined 5amr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5AMR in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5AMR

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 5AMR, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5amr] [5amr_B] [5amr_C] [5amr_A] SWISS-PROT database: Domain organization of by SWISSPFAM

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