OCA Atlas for 5ANR

5ANR

Rna Binding Protein

date

Sep 08, 2015

title

Structure Of A Human 4e-T - Ddx6 - Cnot1 Complex

authors

J.Basquin, S.Oezguer, E.Conti

compound

source

Molecule: Ccr4-Not Transcription Complex Subunit 1
Chain: A
Fragment: Mif4g Domain, Unp Residues 1063-1314
Synonym: Ccr4-Associated Factor 1, Not1h, Negative Regulato Transcription Subunit 1 Homolog, Hnot1, Cnot1-Mif4g Domain;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_variant: Gold
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pec_his_sumo

Molecule: Probable Atp-Dependent Rna Helicase Ddx6
Chain: B
Fragment: Reca1 And Reca2, Unp Residues 95-469
Synonym: Atp-Dependent Rna Helicase P54, Dead Box Protein 6 Rck, Ddx6;
Ec: 3.6.4.13
Engineered: Yes

Molecule: Eukaryotic Translation Initiation Factor 4e Trans
Chain: C
Fragment: Unp Residues 199-239
Synonym: 4e-T, Eif4e Transporter, Eukaryotic Translation In Factor 4e Nuclear Import Factor 1,4et;
Engineered: Yes

symmetry

Space Group: P 32 2 1

R_factor

0.193

R_Free

0.232

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma
93.129	93.129	175.329	90.00	90.00	120.00

method

X-Ray Diffraction

resolution

2.10 Å

ligand

enzyme

Hydrolase E.C.3.6.4.13 BRENDA

Gene
Ontology

Chain	Function	Process	Component
A
B

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (109 Kb) [Save to disk]

Biological Unit Coordinates (5anr.pdb1.gz) 103 Kb

Biological Unit Coordinates (5anr.pdb2.gz) 103 Kb

CSU: Contacts of Structural Units for 5ANR

Structure Factors (728 Kb)

Retrieve 5ANR in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5ANR from S2C, [Save to disk]

Re-refined 5anr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5ANR in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5ANR

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5anr_A] [5anr_C] [5anr] [5anr_B]

SWISS-PROT database:

Domain organization of by SWISSPFAM

Domains found in 5ANR: [DEXDc] [HELICc ] by SMART

Other resources with information on 5ANR

Community annotation for 5ANR at PDBWiki (http://pdbwiki.org)

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