5AO6 Endocytosis date Sep 09, 2015
title Endo180 D1-4, Trigonal Form
authors P.Paracuellos, D.C.Briggs, F.Carafoli, T.Loncar, E.Hohenester
compound source
Molecule: C-Type Mannose Receptor 2
Chain: A, B
Fragment: Domains 1-4, Unp Residues 35-511
Synonym: C-Type Lectin Domain Family 13 Member E, Endocytic 180, Macrophage Mannose Receptor 2, Urokinase-Type Plasmino Activator Receptor-Associated Protein, Upar-Associated Prot Urokinase Receptor-Associated Protein, C-Type Lectin Domain Member E, Endocytic Receptor 180, Macrophage Mannose Recept Urokinase-Type Plasminogen Activator Receptor-Associated Pr Upar-Associated Protein, Urokinase Receptor-Associated Prot 80;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_plasmid: Pcep-Pu
symmetry Space Group: P 32 2 1
R_factor 0.220 R_Free 0.306
crystal
cell
length a length b length c angle alpha angle beta angle gamma
87.000 87.000 321.070 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.36 Å
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (257 Kb) [Save to disk]
  • Biological Unit Coordinates (5ao6.pdb1.gz) 125 Kb
  • Biological Unit Coordinates (5ao6.pdb2.gz) 129 Kb
  • CSU: Contacts of Structural Units for 5AO6
  • Structure Factors (1068 Kb)
  • Retrieve 5AO6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5AO6 from S2C, [Save to disk]
  • Re-refined 5ao6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5AO6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5AO6
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ao6] [5ao6_A] [5ao6_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5AO6: [CLECT] [FN2] [RICIN ] by SMART
    • Other resources with information on 5AO6
  • Community annotation for 5AO6 at PDBWiki (http://pdbwiki.org)

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