5APA Oxidoreductase date Sep 15, 2015
title Crystal Structure Of Human Aspartate Beta-Hydroxylase Isofor
authors T.Krojer, G.Kochan, I.Pfeffer, M.A.Mcdonough, E.Pilka, V.Hozjan, C.Allerston, J.R.Muniz, A.Chaikuad, O.Gileadi, K.Kavanagh, F.Von C.Bountra, C.H.Arrowsmith, J.Weigelt, A.Edwards, U.Oppermann
compound source
Molecule: Aspartylasparaginyl Beta-Hydroxylase
Chain: A
Fragment: Unp Residues 562-758
Synonym: Aspartate Beta-Hydroxylase, Asp Beta-Hydroxylase, Spartate Beta-Dioxygenase, Aspartate Beta-Hydroxylase;
Ec: 1.14.11.16
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 31 2 1
R_factor 0.153 R_Free 0.186
crystal
cell
length a length b length c angle alpha angle beta angle gamma
133.221 133.221 44.637 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.05 Å
ligand EDO, LMR, NI enzyme Oxidoreductase E.C.1.14.11.16 BRENDA
note 5APA supersedes 3RCQ
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (77 Kb) [Save to disk]
  • Biological Unit Coordinates (5apa.pdb1.gz) 72 Kb
  • LPC: Ligand-Protein Contacts for 5APA
  • CSU: Contacts of Structural Units for 5APA
  • Structure Factors (425 Kb)
  • Retrieve 5APA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5APA from S2C, [Save to disk]
  • Re-refined 5apa structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5APA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5APA
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5apa from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5apa_A] [5apa]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5APA
  • Community annotation for 5APA at PDBWiki (http://pdbwiki.org)

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