5AX9 Transferase Transferase Inhibitor date Jul 21, 2015
title Crystal Structure Of The Kinase Domain Of Human Traf2 And Nc Interacting Protein Kinase In Complex With Compund 9
authors N.Ohbayashi, M.Kukimoto-Niino, T.Yamada, M.Shirouzu
compound source
Molecule: Traf2 And Nck-Interacting Protein Kinase
Chain: A, B, C
Ec: 2.7.11.1
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tnik, Kiaa0551
Expression_system: Baculovirus Expression Vector Pfastbac1-
Expression_system_taxid: 274590
symmetry Space Group: P 2 21 21
R_factor 0.205 R_Free 0.271
crystal
cell
length a length b length c angle alpha angle beta angle gamma
47.178 123.204 157.652 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand 4KT, SO4 enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (144 Kb) [Save to disk]
  • Biological Unit Coordinates (5ax9.pdb1.gz) 48 Kb
  • Biological Unit Coordinates (5ax9.pdb2.gz) 47 Kb
  • Biological Unit Coordinates (5ax9.pdb3.gz) 48 Kb
  • LPC: Ligand-Protein Contacts for 5AX9
  • CSU: Contacts of Structural Units for 5AX9
  • Structure Factors (1963 Kb)
  • Retrieve 5AX9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5AX9 from S2C, [Save to disk]
  • Re-refined 5ax9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5AX9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5AX9
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ax9_A] [5ax9] [5ax9_B] [5ax9_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5AX9: [S_TKc ] by SMART
    • Other resources with information on 5AX9
  • Community annotation for 5AX9 at PDBWiki (http://pdbwiki.org)

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