5B16 Hydrolase date Nov 23, 2015
title X-Ray Structure Of Drosha In Complex With The C-Terminal Tai Dgcr8.
authors S.C.Kwon, T.A.Nguyen, Y.G.Choi, M.H.Jo, S.Hohng, V.N.Kim, J.S.Woo
compound source
Molecule: Ribonuclease 3,Drosha,Ribonuclease 3,Drosha,Ribon
Chain: A
Fragment: Unp Residues 411-458,Unp Residues 522-711,Unp Res 1365;
Synonym: Protein Drosha,Ribonuclease III,Rnase III,P241,Pro Drosha,Ribonuclease III,Rnase III,P241,Protein Drosha,Ribon III,Rnase III,P241;
Ec: 3.1.26.3
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Drosha, Rn3, Rnase3l, Rnasen
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293

Molecule: Microprocessor Complex Subunit Dgcr8
Chain: B, C
Fragment: Unp Residues 728-750
Synonym: Digeorge Syndrome Critical Region 8
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dgcr8, C22orf12, Dgcrk6, Lp4941
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293
symmetry Space Group: C 1 2 1
R_factor 0.267 R_Free 0.300
crystal
cell
length a length b length c angle alpha angle beta angle gamma
117.254 118.136 122.296 90.00 102.07 90.00
method X-Ray Diffractionresolution 3.20 Å
ligand ZN enzyme Hydrolase E.C.3.1.26.3 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of Human DROSHA., Kwon SC, Nguyen TA, Choi YG, Jo MH, Hohng S, Kim VN, Woo JS, Cell. 2016 Jan 14;164(1-2):81-90. doi: 10.1016/j.cell.2015.12.019. Epub 2015 Dec , 31. PMID:26748718
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (269 Kb) [Save to disk]
  • Biological Unit Coordinates (5b16.pdb1.gz) 261 Kb
  • LPC: Ligand-Protein Contacts for 5B16
  • CSU: Contacts of Structural Units for 5B16
  • Structure Factors (603 Kb)
  • Retrieve 5B16 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5B16 from S2C, [Save to disk]
  • Re-refined 5b16 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5B16 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5B16
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5b16 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5b16] [5b16_A] [5b16_C] [5b16_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5B16: [DSRM] [RIBOc ] by SMART
  • Other resources with information on 5B16
  • Community annotation for 5B16 at PDBWiki (http://pdbwiki.org)

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