OCA Atlas for 5B5T

5B5T

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

6FY, CA

enzyme

Gene
Ontology

Chain	Function	Process	Component
A, D, B, C

Primary reference

Phosphonate-based irreversible inhibitors of human gamma-glutamyl transpeptidase (GGT). GGsTop is a non-toxic and highly selective inhibitor with critical electrostatic interaction with an active-site residue Lys562 for enhanced inhibitory activity., Kamiyama A, Nakajima M, Han L, Wada K, Mizutani M, Tabuchi Y, Kojima-Yuasa A, Matsui-Yuasa I, Suzuki H, Fukuyama K, Watanabe B, Hiratake J, Bioorg Med Chem. 2016 Aug 31. pii: S0968-0896(16)30667-8. doi:, 10.1016/j.bmc.2016.08.050. PMID:27622749

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (192 Kb) [Save to disk]

Biological Unit Coordinates (5b5t.pdb1.gz) 94 Kb

Biological Unit Coordinates (5b5t.pdb2.gz) 95 Kb

LPC: Ligand-Protein Contacts for 5B5T

CSU: Contacts of Structural Units for 5B5T

Structure Factors (1219 Kb)

Retrieve 5B5T in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5B5T from S2C, [Save to disk]

Re-refined 5b5t structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5B5T in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5b5t] [5b5t_A] [5b5t_B] [5b5t_C] [5b5t_D]

SWISS-PROT database:

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