5BCA Hydrolase date Mar 12, 1999
title Beta-Amylase From Bacillus Cereus Var. Mycoides
authors T.Oyama, M.Kusunoki, Y.Kishimoto, Y.Takasaki, Y.Nitta
compound source
Molecule: Protein (1,4-Alpha-D-Glucan Maltohydrolase.)
Chain: A, B, C, D
Ec: 3.2.1.2
 Organism_scientific: Bacillus Cereus
Organism_taxid: 1396
Strain: Bacillus Cereus
Variant: Mycoides
Cellular_location: Extracellular
symmetry Space Group: C 1 2 1
R_factor 0.186 R_Free 0.240
crystal
cell
length a length b length c angle alpha angle beta angle gamma
177.900 112.900 146.200 90.00 105.80 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand CA enzyme Hydrolase E.C.3.2.1.2 BRENDA
related structures by homologous chain: 1B90, 1VEO
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceCrystal structure of beta-amylase from Bacillus cereus var. mycoides at 2.2 A resolution., Oyama T, Kusunoki M, Kishimoto Y, Takasaki Y, Nitta Y, J Biochem (Tokyo) 1999 Jun;125(6):1120-30. PMID:10348915
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (344 Kb) [Save to disk]
  • Biological Unit Coordinates (5bca.pdb1.gz) 89 Kb
  • Biological Unit Coordinates (5bca.pdb2.gz) 88 Kb
  • Biological Unit Coordinates (5bca.pdb3.gz) 88 Kb
  • Biological Unit Coordinates (5bca.pdb4.gz) 89 Kb
  • LPC: Ligand-Protein Contacts for 5BCA
  • CSU: Contacts of Structural Units for 5BCA
  • Likely Quarternary Molecular Structure file(s) for 5BCA
  • Retrieve 5BCA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5BCA from S2C, [Save to disk]
    • View 5BCA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5BCA
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 5BCA, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d5bcaa2, region A:1-417 [Jmol] [rasmolscript] [script source]
        - Domain d5bcaa1, region A:418-516 [Jmol] [rasmolscript] [script source]
        - Domain d5bcab2, region B:1-417 [Jmol] [rasmolscript] [script source]
        - Domain d5bcab1, region B:418-516 [Jmol] [rasmolscript] [script source]
        - Domain d5bcac2, region C:1-417 [Jmol] [rasmolscript] [script source]
        - Domain d5bcac1, region C:418-516 [Jmol] [rasmolscript] [script source]
        - Domain d5bcad2, region D:1-417 [Jmol] [rasmolscript] [script source]
        - Domain d5bcad1, region D:418-516 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5bca_D] [5bca_B] [5bca_C] [5bca] [5bca_A]
  • SWISS-PROT database: [P36924] [Q9Z4N9]
  • Domain organization of [AMYB_BACCE] [Q9Z4N9_BACCE] by SWISSPFAM
  • Domain found in 5BCA: [CBM_2 ] by SMART
    • Other resources with information on 5BCA
  • Community annotation for 5BCA at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science